1. Log into your cpanel account.
2. In the "Files" section, click on "Backup Wizard" Icon.
3. Under "Backup or Restore"
In the 2nd step "Full or Partial Backup" option, under "Select Partial Backup", you need to click on "Home Directory" to download home directory only or should download only "SQL Database", click on "MySQL Database". 
Portal Home Knowledgebase Backup/Restore How to Download Backup of Home Directory, MySQL or E-mail Only?
How to Download Backup of Home Directory, MySQL or E-mail Only? Print
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